Aggregating Metaanalysis Data
I became well-aquainted NCBI SRA database today
It’s not the most user-friendly database, but it’s still pretty great! Based off of Sean and Grace’s previous searches and some of my own searches, I found C. gigas methylation data. You can read up on my methods here.
I recorded the following metadata for each run I found:
- Project code
- SRA study code
- Experiment code
- Experimental Design
- Sample type
- Library information (Name, Platform, Strategy, Source, Selection, Layout)
- Run code
- Run information (Spots, Bases, Size, GC Content)
- Submitted by
- Date published
All of the metadata is in this spreadsheet. Tomorrow, I’ll download the data (apparently it’s not a straightforward process).