DMG Analysis Part 4
Characterizing GOslim terms
I was working through my discussion outline, but was unsure what to make of the lists of parent GOterms I matched to DMG and genes with DML. Steven suggested I look at GOslim terms instead.
I used this Jupyter notebook to get GOslim terms for transcripts. I created separate lists for biological processes and molecular functions. I returned to my DML gene enrichment and DMG gene enrichment to figure out which GOslim terms go with DML and DMG. To do that, I merged GOslim terms with GO-MWU output, then counted the frequency of each GOslim term present. Here are the resulting tables:
I’ll take the categories with the most transcripts and start there for a discussion.
- Update methods and results
- Finalize figures
- Update paper repository
- Outline the discussion
- Write the discussion
- Write the introduction
- Revise my abstract
- Share the draft with collaborators and get feedback
- Post the paper on bioRXiv
- Prepare the manuscript for publication