Gonad Methylation Analysis Part 9

The whole enchilada

In this Jupyter notebook, I ran the bismark alignment on the full range of my samples. The .txt file output can be found here. The .bam files produced were several GBs! I saved them in this OWL folder. I also uploaded all .bam output from my file subsets here.

My next step is to run these samples through methylKit in R. Iā€™m going to test this first with the subset data I have, then start plugging along on these large files.

Written on May 8, 2018