WGBS Analysis Part 7
Further DML annotations
After my practice talk, I returned to annotating DML output because I need some sort of gene information to present at PCSGA. In this Jupyter notebook, I downloaded this
blast output, originally hosted at this OWL link. Unlike the previous
blast output I tried working with, it’s not truncated. I merged the
blast output with my DML-gene overlaps using
awk, since I couldn’t get a
join command to work. I then tried assigning GOslim terms to GOterms, but I encountered a script error. At this point, it was 10:30 p.m. and I needed to finish my talk, so I’ll return to this before WSN.
- REVISE MY TALK
- Present preliminary results at PCSGA
- Figure out how to clean up results for WSN and ASLO
- Potentially sequence more samples…?
- Return to C. virginica data and finish. that. paper.
Written on September 16, 2019